Package: DatabionicSwarm
Type: Package
License: GPL-3
Title: Swarm Intelligence for Self-Organized Clustering
Version: 2.0.0
Date: 2024-06-20
Authors@R: c(person("Michael", "Thrun", email= "m.thrun@gmx.net",role=c("aut","cre","cph"), comment = c(ORCID = "0000-0001-9542-5543")),person("Quirin", "Stier",role=c("aut","rev"), comment = c(ORCID = "0000-0002-7896-4737")))
Description: Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, <DOI:10.1016/j.artint.2020.103237>. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matrix (GeneratePswarmVisualization()). The third module is the clustering method itself with non-critical parameters (DBSclustering()). Clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. It enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields. The comparison to common projection methods can be found in the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>.
Imports: Rcpp (>= 1.0.8), RcppParallel (>= 5.1.4), deldir,
        GeneralizedUmatrix, ABCanalysis, ggplot2
Suggests: DataVisualizations, knitr (>= 1.12), rmarkdown (>= 0.9),
        plotrix, geometry, sp, spdep, parallel, rgl, png,
        ProjectionBasedClustering, parallelDist, pracma, dendextend
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Depends: R (>= 3.0)
NeedsCompilation: yes
SystemRequirements: GNU make, pandoc (>=1.12.3, needed for vignettes)
LazyLoad: yes
LazyData: TRUE
URL: https://www.deepbionics.org/
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/Mthrun/DatabionicSwarm/issues
Packaged: 2024-06-20 09:08:14 UTC; quiri
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
  Quirin Stier [aut, rev] (<https://orcid.org/0000-0002-7896-4737>)
Maintainer: Michael Thrun <m.thrun@gmx.net>
Repository: CRAN
Date/Publication: 2024-06-20 10:10:16 UTC
Built: R 4.6.0; x86_64-w64-mingw32; 2026-05-04 02:31:36 UTC; windows
Archs: x64
