# Hierarchical Modelling of Faecal Egg Counts

## Documentation for package ‘eggCounts’ version 2.5-1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

eggCounts-package | Hierarchical modelling of faecal egg counts
epgs | Faecal egg count samples (before and after treatment)
fecrtCI | Compute standard FECRT according to WAAVP guidelines
fecrtCI_Levecke | Compute standard FECRT according to WAAVP guidelines
fecr_probs | Compute probability of the reduction parameter relative to a given threshold
fecr_stan | Model the reduction of faecal egg count
fecr_stanExtra | Model the reduction of faecal egg count using custom models
fecr_stanSimple | Model the reduction of faecal egg count using a simple Bayesian model
fec_stan | Modelling of faecal egg count data (one-sample case)
getPrior_delta | Get prior parameters from Beta distribution
getPrior_mu | Get prior parameters from Gamma distribution
plotCounts | Plot faecal egg count data
simData1s | Simulate faecal egg count data (1-sample situation)
simData2s | Simulate faecal egg count data (2-sample situation)
stan2mcmc | Convert a Stanfit object to a MCMC object