Package: harmony
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Version: 1.2.4
Authors@R: c(
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com",
        role = c("cre", "aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Martin", "Hemberg", email = "mhemberg@bwh.harvard.edu",
        role = c("aut"), comment = c(ORCID = "0000-0001-8895-5239")),
    person("Nikolaos", "Patikas", email = "nik.patik@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-3978-0134")),
    person("Hongcheng", "Yao", email = "hongchengyaonk@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-0743-4835")),
    person("Nghia", "Millard", email = "nmillard@g.harvard.edu",
        role = "aut", comment = c(ORCID = "0000-0002-0518-7674")),
    person("Jean", "Fan", email = "jeanfan@fas.harvard.edu",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-0212-5451")),
    person("Kamil", "Slowikowski", email = "kslowikowski@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-2843-6370")),
    person("Miles", "Smith",
        role = c("ctb")),
    person("Soumya", "Raychaudhuri",
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.
URL: https://github.com/immunogenomics/harmony
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R(>= 3.5.0), Rcpp
LazyData: true
LazyDataCompression: gzip
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Imports: dplyr, cowplot, ggplot2, Matrix, methods, tibble, rlang,
        RhpcBLASctl
Suggests: SingleCellExperiment, Seurat (>= 4.1.1), testthat, knitr,
        rmarkdown, ggthemes, ggrepel, patchwork, tidyverse, tidyr,
        data.table
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2025-10-09 17:59:31 UTC; main
Author: Ilya Korsunsky [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-4848-3948>),
  Martin Hemberg [aut] (ORCID: <https://orcid.org/0000-0001-8895-5239>),
  Nikolaos Patikas [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-3978-0134>),
  Hongcheng Yao [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-0743-4835>),
  Nghia Millard [aut] (ORCID: <https://orcid.org/0000-0002-0518-7674>),
  Jean Fan [aut, ctb] (ORCID: <https://orcid.org/0000-0002-0212-5451>),
  Kamil Slowikowski [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-2843-6370>),
  Miles Smith [ctb],
  Soumya Raychaudhuri [aut] (ORCID:
    <https://orcid.org/0000-0002-1901-8265>)
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
Repository: CRAN
Date/Publication: 2025-10-10 05:30:09 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2026-01-19 04:22:28 UTC; windows
Archs: x64
